SAhypothesis-generationK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchexperimental designscientific methodpreregistrationFormulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and...
SAetetoolkitK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticsphylogeneticstree analysisAnalyzes, manipulates, compares, annotates, and visualizes phylogenetic or other hierarchical trees with ETE 4. Supports Newick/Nexus tree I/O, topology edits and pattern...
SAexa-searchK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchAPI integrationweb searchcontent extractionSearches scientific and technical web content with Exa and extracts page or PDF text from URLs in batches. Supports scholarly discovery with the publication category and academic...
SAexperimental-designK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchexperimental designrandomizationDOEDesigns experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so results are interpretable. Use...
SAfluidsimK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchHPCscientific computingcomputational-fluid-dynamicsPlans, configures, inspects, restarts, and analyzes bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and HPC safety checks. Use for...
SAggetK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticsgenomicssequence analysisQueries 20+ bioinformatics resources through CLI/Python. Supports quick lookups of gene info, BLAST/BLAT, viral sequence downloads, PDB/mmCIF structures, G2P residue annotations,...
SAglycoengineeringK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticsprotein engineeringsequence analysisAnalyzes and engineers protein glycosylation by scanning canonical N-glycosylation sequons, describing S/T-rich regions, checking curated glycan evidence, and preparing NetNGlyc,...
SAgtarsK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticsgenomicsRust bindingsSupports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning...
SAdhdna-profilerK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchtext analysiscognitive frameworkqualitative rubricApplies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text. Used for explicit requests for DHDNA, cognitive-style reflection, a...
SAbgpt-paper-searchK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchMCP integrationevidence synthesisscientific papersSearches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistics, scope, limitations, and...
SAbidsK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchneuroimagingdata organizationBIDS standardOrganizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET,...
SAbiopythonK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticssequence analysisphylogeneticsProvides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Supports batch...
SAbioservicesK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticsdata-integrationpython-apiProvides a Python interface to bioinformatics services including UniProt, KEGG, ChEMBL, Reactome, QuickGO, and UniChem. Used for cross-database protein annotation, pathway...
SAcitation-managementK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchBibTeXcitation managementacademic searchComprehensive citation management for academic research. Search OpenAlex, PubMed, and Google Scholar for papers, extract accurate metadata, validate citations, and generate...
SAclinical-decision-supportK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchevidence synthesisregulatory complianceclinical researchPrepares and validates research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model, privacy, and governance artifacts. Supports...
SAconsciousness-councilK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchdecision makingmulti-perspective analysistrade-off analysisStructures a multi-perspective council exercise for decisions, research trade-offs, and creative challenges. Simulates thinking archetypes, separates evidence from assumptions and...
SAadaptyvK-Dense-AI-scientific-agent-skills#scientific-agent-skillsResearchbioinformaticsprotein engineeringPython SDKUses the Adaptyv Bio Foundry API and Python SDK to design protein characterization experiments, estimate costs, submit sequences, monitor laboratory progress, and retrieve...
DDdbs-deconstructdontbesilent2025-dbskill#dbs-deconstructv3.0.2Researchcritical thinkingclarificationconcept-analysis用维特根斯坦与奥派经济学方法拆解模糊的商业概念。用户要求解释一个词、澄清概念边界或识别概念混用时使用。
ASmedical-literature-evidence-mapallinherog-star-ai-skills#ai-skillsResearchhealthcaremedical literatureevidence mapping业务诊断助手适合运营、市场营销、healthcare、教育培训在用户提出“这件事该怎么做”这类问题,需要快速拆解目标、判断重点并形成可执行结果时使用,帮助基于输入材料生成摘要、诊断结论、行动建议和可复用交付物。
ASjust-scrapeallinherog-star-ai-skills#ai-skillsResearch业务诊断助手适合市场营销、运营、产品、销售在用户提出“这件事该怎么做”这类问题,需要快速拆解目标、判断重点并形成可执行结果时使用,帮助基于输入材料生成摘要、诊断结论、行动建议和可复用交付物。