OMnsf-standardpradyumnasagar-open-research-skills#ors-metaResearchgrant-proposalsnsf-pappgresearch-fundingUse when planning, drafting, or revising an NSF Standard Research Proposal: Project Description (15 pp), Data Management Plan, Postdoc Mentoring Plan, Broader Impacts,...
OMperspective-tourpradyumnasagar-open-research-skills#ors-metaResearchproject scopingmulti-perspective analysisgrant writingMulti-perspective exploration of a research question using 5-7 expert lenses. Use for grant specific aims, manuscript framing, project scoping, or when a question benefits from...
OMreviewer-responsepradyumnasagar-open-research-skills#ors-metaResearchpeer reviewscientific writingacademic-publishingWrite a respectful, point-by-point response to peer-reviewer comments (rebuttal): tone, structure, line-numbered references, conflict handling, partial-response strategy, and...
OMscholar-evaluationpradyumnasagar-open-research-skills#ors-metaResearchacademic evaluationpeer reviewresearch-assessmentEvaluate a researcher's portfolio (CV, publications, citations, funding, mentorship, service, software, talks) for tenure, awards, recruitment, or promotion: field-normalized...
OMspecific-aimspradyumnasagar-open-research-skills#ors-metaResearchgrant writingacademic writingproposal-draftingUse when drafting or revising the NIH Specific Aims page (1 page) for an R01, R21, R03, F-series, or K-series: concrete structure, opening-paragraph formula, Aim-construction...
OMcellprofiler-pipelinespradyumnasagar-open-research-skills#ors-metaResearchimage analysismicroscopyhigh-content-screeningUse CellProfiler 5.x to build reproducible pipelines for cell/nuclei segmentation, illumination correction, feature extraction, and high-content screening assays including...
OMcitation-managementpradyumnasagar-open-research-skills#ors-metaResearchliterature reviewBibTeXreference managementSet up and use reference managers (Zotero, Mendeley, EndNote) with citation styles, group libraries, PDF annotation, DOI/PMID workflows, and BibTeX export for reproducible...
OMcode-releasepradyumnasagar-open-research-skills#ors-metaResearchcontainerizationreproducibilitysoftware-archivingUse when releasing research code: Zenodo-GitHub integration for a citable DOI, Citation File Format (CFF), containerization with Docker/Apptainer, conda lockfiles, and...
OMeln-chemotionpradyumnasagar-open-research-skills#ors-metaResearchREST APIlab automationelectronic-lab-notebookChemotion open electronic lab notebook for chemists via REST API. Molecule editor, reactions, samples, spectra (NMR/IR/MS), inventory. Open-source alternative to ChemAxon/Accelrys...
OMeln-elabftwpradyumnasagar-open-research-skills#ors-metaResearchREST APIlab automationself-hostedeLabFTW open-source electronic lab notebook via REST API. Self-hosted ELN/LIMS alternative to Benchling and LabArchives: experiments, database entries, inventory, equipment...
OMeln-openbispradyumnasagar-open-research-skills#ors-metaResearchlab automationELNlife-sciencesopenBIS open LIMS/ELN for life-sciences facilities via REST and Python API. Sample tracking across collections, spaces, datasets, vocabularies; integration with instruments and...
OMfair-datapradyumnasagar-open-research-skills#ors-metaResearchopen-sciencedata-managementmetadata-standardsUse when designing a data management plan, choosing a repository, structuring metadata, or making research data Findable, Accessible, Interoperable, and Reusable per Wilkinson et...
OMimage-analysis-best-practicespradyumnasagar-open-research-skills#ors-metaResearchreproducibilityimage analysisstatisticsApply best practices for microscopy image analysis: pixel-size calibration, channel bleed-through, exposure and dynamic range, controls, publication figures, color-blind safe...
OMimagej-fiji-macropradyumnasagar-open-research-skills#ors-metaResearchmicroscopyimagejfijiRecord, write, and run ImageJ/Fiji macros for batch processing, ROI handling, intensity measurement, colocalization, time-lapse, FRET, and plugin installation in life-sciences...
OMliterature-searchpradyumnasagar-open-research-skills#ors-metaResearchprismasystematic reviewliterature searchDesign reproducible, multi-database literature searches for biomedical and scientific questions. Covers PubMed/Web of Science/Scopus/Embase/IEEE/ACM/AGRICOLA/ERIC/PsycINFO, open...
OMpaper-lookuppradyumnasagar-open-research-skills#ors-metaResearchliterature searchacademic paperscitation-analysisLook up and resolve academic papers by DOI, PMID, arXiv ID, or title using Crossref, PubMed, OpenAlex, Semantic Scholar, and check retractions, preprints, and forward citations.
OMpreprintspradyumnasagar-open-research-skills#ors-metaResearchopen-sciencelicensingpreprint-serversUse when choosing a preprint server (bioRxiv, medRxiv, ChemRxiv, SSRN, arXiv), selecting a license (CC-BY vs CC-BY-NC-ND), versioning, scoop protection, or planning journal...
OMpreregistrationpradyumnasagar-open-research-skills#ors-metaResearchreproducibilityclinical trialsopen-scienceUse when preregistering a study design (hypothesis, methods, analysis plan) before data collection on OSF Registries or AsPredicted, applying for ClinicalTrials.gov registration...
OMprotocolsio-protocol-repositorypradyumnasagar-open-research-skills#ors-metaResearchREST APIreproducibilitylab automationSearch and download published wet-lab protocols from protocols.io REST API. Find 90,000+ community protocols by keyword, DOI, or filter; extract steps, reagents, materials,...
OMqupath-pathologypradyumnasagar-open-research-skills#ors-metaResearchbioinformaticsdigital pathologymicroscopyUse QuPath 0.5.x for whole-slide image import, annotation, cell detection, pixel classification, deep-learning workflows (StarDist, Cellpose), and multiplexed analysis in digital...