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Data & Analytics

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bioservicesaipoch-medical-research-skills

Unified Python access to 40+ bioinformatics web services; use when you need to query multiple databases (e.g., UniProt/KEGG/ChEMBL/Reactome) with one consistent API in a single...

Data & Analytics
2K
biopython-sequence-ioaipoch-medical-research-skills

Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O,...

Data & Analytics
2K
biopython-advancedaipoch-medical-research-skills

Advanced Biopython modules for motifs, population genetics, sequence utilities, restriction analysis, clustering, and GenomeDiagram visualization; use when you need extended...

Data & Analytics
2K
bio-causal-genomics-pleiotropy-detectionaipoch-medical-research-skills

Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger...

Data & Analytics
2K
bio-causal-genomics-mediation-analysisaipoch-medical-research-skills

Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. Tests whether gene expression, methylation, or other molecular...

Data & Analytics
2K
anndataaipoch-medical-research-skills

Data structure for annotated matrices in single-cell analysis; use when reading/writing .h5ad (or zarr) and exchanging data with the scverse ecosystem.

Data & Analytics
2K
baseline-extraction-for-clinical-trialsaipoch-medical-research-skills

Extracts clinical trial baseline data (study, region, participants, etc.) from article text or PMID. Checks PubMed for metadata; always falls back to LLM extraction for full...

Data & Analytics
2K
3d-molecule-ray-traceraipoch-medical-research-skills

Generate photorealistic rendering scripts for PyMOL and UCSF ChimeraX.

Data & Analytics
2K
microbiome-diversity-reporteraipoch-medical-research-skills

Interpret Alpha and Beta diversity metrics from 16S rRNA sequencing results.

Data & Analytics
2K
wgcna-analysisaipoch-medical-research-skills

Use when building a weighted gene co-expression network from a bulk expression matrix and a sample group file, filtering variable genes by MAD, identifying co-expression modules...

Data & Analytics
2K
univariate-multivariable-cox-regressionaipoch-medical-research-skills

Use when running prognostic survival analysis on a clinical cohort with time-to-event data to estimate univariate and multivariable Cox proportional hazards models, export result...

Data & Analytics
2K
umap-tsne-analysisaipoch-medical-research-skills

Use when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE...

Data & Analytics
2K
time-dependent-rocaipoch-medical-research-skills

Use when performing time-dependent ROC curve analysis for survival data with follow-up time, event status, and a numeric marker. Supports CSV/TXT/TSV/Excel input, as the default...

Data & Analytics
2K
svm-model-importance-analysisaipoch-medical-research-skills

Use when you need a standardized R CLI workflow to run two-class SVM-RFE feature ranking on an expression-like matrix, choose an informative feature count from cross-validated...

Data & Analytics
2K
ssgsea-immune-infiltration-analysisaipoch-medical-research-skills

Use when estimating immune infiltration from bulk RNA-seq expression matrices with ssGSEA/GSVA, comparing case versus control groups, and generating downstream immune-score...

Data & Analytics
2K
sample-group-sankey-plotaipoch-medical-research-skills

Use when generating Sankey or alluvial plots from sample annotation tables where rows are samples and selected columns are categorical stages such as risk group, response status,...

Data & Analytics
2K
sample-correlation-analysisaipoch-medical-research-skills

Use when performing correlation analysis between two variables including Pearson and Spearman correlation methods. Supports command-line parameter input, automatic data format...

Data & Analytics
2K
roc-diagnostic-performanceaipoch-medical-research-skills

Use when evaluating diagnostic biomarker performance from case-control expression data with logistic regression and ROC curves, exporting coefficient and AUC tables together with...

Data & Analytics
2K
ppi-network-analysisaipoch-medical-research-skills

Use when you need a standardized R CLI workflow to build a protein-protein interaction network from a local gene list and an offline STRING cache, export node and edge tables, and...

Data & Analytics
2K
pca-dimensionality-reductionaipoch-medical-research-skills

Use when performing PCA principal component dimensionality reduction on tabular numeric data. Supports command-line parameter input, automatic numeric feature selection, parameter...

Data & Analytics
2K